rs36792541 SNP Detail

Summary

• ID
  rs36792541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135397801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGGTTC TCTCCAGAGA
  ACCATGAATT TATATTGGGT CTGGATGAAG TCTTCAATCC GCTCGATTAT TTCAGCCACA
  GCGCATTGTC CGGCCTGTGT GATCATCGCT GTGGATGGAA TTAGAGCGAC AGTGAGACCC
  GCAGTGTTGG TTCACAGCTC ATAAATCCTT ATCCGGCTCA AGGGAGGTTA TTTTTCTGGA
  R
  AGGCCTCCCA CTGATGACCG TTTGCGAGCA TTTGAGCGTC TTTATTCTTT GGGCAAAGTG
  CCTCCATGGG CCAGGAATGA CAGCCTGGGG CTAGGTAGCT CCCAAGTGAG TTTTGACTTA
  AACCTATTTT AGAGTTCGGG GGTCTCACTA CTGAGTTCAA GTGGAAATAC AACTTTGAAA
  GGCCAGGGAT CAATCAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51649046	NES14653462	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36792541					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649046	NES14653462	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135397801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	60 bp distal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	493 bp upstream
Rr398044	regulatory region 398044	1602 bp downstream
Rr585767	regulatory region 585767	4 bp distal
Rr585768	regulatory region 585768	990 bp proximal
Tssr35825	transcription start site region 35825	784 bp upstream
Tssr35826	transcription start site region 35826	769 bp upstream
Tssr35827	transcription start site region 35827	727 bp upstream
Tssr35828	transcription start site region 35828	670 bp upstream
Tssr35829	transcription start site region 35829	633 bp upstream
Tssr35830	transcription start site region 35830	623 bp upstream
Tssr35831	transcription start site region 35831	561 bp upstream
Tssr35832	transcription start site region 35832	529 bp upstream
Tssr35833	transcription start site region 35833	476 bp upstream
Tssr35834	transcription start site region 35834	59 bp upstream