rs3679307 SNP Detail

Summary

• ID
  rs3679307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75928570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTATAGCTG TGCAGATATA TCACTGGCCT GATGTTCCAC
  TGGAGAGGAA AACTATTTCA AGGCTGAGTG ACAACTATAG CACACTCTGT TAGAAGAAGA
  R
  TAAATCTTCC TTAGTCTACA CTCGGGTTGC AGAACGAGAA AGAAAGGAAT AGAGCAGATG
  GGGGAAAATG CACACATTAC AAAAACCAAC ACAAGGTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5055326	WI_WGS_2_76966811	WI	MOUSE	f	SNP		G	A
ss146770217	ENSMUSSNP6589778	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320352648	CHEV_2_75936283	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3679307					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75928570 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	728 bp distal
Rr559648	regulatory region 559648	within coordinates
Rr559649	regulatory region 559649	1370 bp proximal