rs36793631 SNP Detail

Summary

• ID
  rs36793631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25778501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCTCACCT GGACAGAATG TCCACTTAGC AGTTACACGA
  GACACTTAGG CTGCTGCATG GGCTCCACCA AAGCCTCTGG GGTGCAGCTC TGTCCTGTGA
  Y
  GTTGCTACCT GAGTGTATCT CTTGTCTTAA ACACTGGGGC TCATGAGGAT TTCAGGTTCT
  GGAGTTTTTC ATATTGGAAT CTCTTATCTG CCTGGCCTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51610540	NES14603640	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36793631					SNP	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51610540	NES14603640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25778501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6971	CpG island 6971	1459 bp proximal
Myo10	myosin X	within coordinates
Tssr130836	transcription start site region 130836	275 bp downstream
Tssr130837	transcription start site region 130837	1584 bp upstream