rs3679400 SNP Detail

Summary

• ID
  rs3679400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:55679335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC TGTATATGGG ATAGTTTCCC
  Y
  ACCCATGGGA GGAGATACAG AGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5055419	WI_WGS_11_56277705	WI	MOUSE	f	SNP	T		C
ss132150287	ENSMUSSNP345717	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss323676542	CHEV_11_55602011	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3679400					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55679335 () rs orientation: forward

Symbol	Name	Function Class
D11Mit349	DNA Segment, Chr 11 Massachusetts Institute of Technology 349	839 bp proximal
Gm50502	predicted gene, 50502	within coordinates
Rr447615	regulatory region 447615	1220 bp proximal
Rr447616	regulatory region 447616	1343 bp proximal