rs36794616 SNP Detail

Summary

• ID
  rs36794616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61330072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTTAAT AACTTGGCTA
  AATGTTTTAA TCTCATGTGA GTCCTCTATT CCGCACTTGG GAGAACTTTT CTTACCTGTT
  GAAGTCCTTT TCTGAAGAAA CTACTCAACT CCTAACCTGC AGCCAGCTCC TGAGAATGAC
  ACCCCAGTAC ATCTAGGGCC CTGTGAAGGC TCCAAGTCCT GCATTAAAAG TGGTCACTGG
  Y
  ATCAATATTT ATCATATGCC AACAGGATGC GTGGCCATAA GCATCAACAC TGCTTTCCCA
  TCTGCAAAGT AATGATGGAT GTCCTTTTGG AAGCACCCCA TCACCTCTGT ACTCATCCAT
  AAACAGCCAC TTCTATAAAG AAAGACTGCC TAAGATGCCC CAGTGGTGGG AGGGTGGCAT
  TTCTTAAGGG GAACTGTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50413728	NES13453090	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36794616					SNP	C	C	C	C	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413728	NES13453090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61330072 () rs orientation: forward

Symbol	Name	Function Class
Rr356345	regulatory region 356345	1990 bp distal
Slc26a2	solute carrier family 26 (sulfate transporter), member 2	within coordinates
Tssr153542	transcription start site region 153542	769 bp upstream
Tssr153543	transcription start site region 153543	602 bp upstream
Tssr153544	transcription start site region 153544	443 bp upstream
Tssr153545	transcription start site region 153545	705 bp downstream