rs3679467 SNP Detail

Summary

• ID
  rs3679467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:150359822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT GCTTTTCACC AAAAATATTG
  Y
  CCCTTCTTTT ATATATGATG TGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5055486	WI_WGS_X_128580166	WI	MOUSE	f	SNP					T			C
ss38489763	NES09750855	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C		C	C	T	T		C	T	C	C		T
ss46417365	mCV25451855	ABI	CRAMUS_MOUSE	r	SNP		A	A					G		G
ss134504666	ENSMUSSNP966185	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss325986255	CHEV_X_148011369	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3679467					SNP	C	T	T	C	T	C	C	C	C	C	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489763	NES09750855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150359822 () rs orientation: forward

Symbol	Name	Function Class
Phf8	PHD finger protein 8	within coordinates
Rr3265	regulatory region 3265	1222 bp distal
Rr10519	regulatory region 10519	1344 bp distal
Rr395772	regulatory region 395772	885 bp upstream