rs36794795 SNP Detail

Summary

• ID
  rs36794795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATACGTG ATCTTTATAA
  AATAAGGGAG GAACCGAACA ATACTGGGGG AGGGGAGCGG TGTGTGTGTA TGTCTTTCCT
  CTCCTATTCT TGCAAACTTT TCATCCAATC GGAAACTAGA AGGATGCCGC TTGTGCATTC
  TGGCTCACTA GCCGACATCC CGGTCCCCCG CCGTCACATG CTGTTATTGA ACTTGGGAAA
  Y
  ATCCCAGTCC GGAGTGCACA AGCCTCTTCC AGACCCACCT CCCGGCCGTA GCCGGGTCAC
  AGGAAAGCCC AGCGTCGTTG TGATCCGGGA TTTTCCAATT TTCCCAGAGG ATTCGCATCC
  GGTTGCTGGG AGAGGCTCCG TGGGGGGTCC GCGGCCAGGG AGGGGAGTGG GGCCGGGGTG
  GGGATAAGAA GTGGAGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51618314	NES14659877	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C	C	T	T	T		T	T	T	C		T
ss135871362	ENSMUSSNP4565316	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320956924	CHEV_3_127493521	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36794795					SNP	C	C	C	T	C	T	C	C	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618314	NES14659877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	475 bp distal
Cpgi13801	CpG island 13801	35 bp proximal
Gm56817	predicted gene, 56817	346 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	681 bp distal
Rr584861	regulatory region 584861	784 bp distal
Rr584862	regulatory region 584862	357 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	212 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1401 bp downstream
Tssr31595	transcription start site region 31595	1389 bp downstream
Tssr31596	transcription start site region 31596	1356 bp downstream
Tssr31597	transcription start site region 31597	1316 bp downstream
Tssr31598	transcription start site region 31598	1293 bp downstream
Tssr31599	transcription start site region 31599	794 bp downstream
Tssr31600	transcription start site region 31600	726 bp downstream
Tssr31601	transcription start site region 31601	674 bp downstream
Tssr31602	transcription start site region 31602	620 bp downstream
Tssr31603	transcription start site region 31603	602 bp downstream
Tssr31604	transcription start site region 31604	478 bp downstream
Tssr31605	transcription start site region 31605	within coordinates
Tssr31606	transcription start site region 31606	197 bp upstream
Tssr31607	transcription start site region 31607	435 bp upstream
Tssr31608	transcription start site region 31608	503 bp upstream
Tssr31609	transcription start site region 31609	554 bp upstream
Tssr31610	transcription start site region 31610	663 bp upstream
Tssr31611	transcription start site region 31611	771 bp upstream
Tssr35598	transcription start site region 35598	845 bp upstream
Tssr35599	transcription start site region 35599	763 bp upstream
Tssr35600	transcription start site region 35600	735 bp upstream
Tssr35601	transcription start site region 35601	702 bp upstream
Tssr35602	transcription start site region 35602	385 bp upstream