rs36795336 SNP Detail

Summary

• ID
  rs36795336
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:112854800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCCTAT AATCCTAGAA
  CCTGTGAGGT AGAACAGGAA GATCAAGGTA CAGAGTGAAC TTGAAGTCAG CCTGGACTAA
  ATAAAATCTG AGAGAGAGAC AGAGAGAGAG AGACAGAGAC AGACAGAGAG AGACAATGGC
  AATGAGGTCT CCTCTACTGA CCTTGATAAT CACAGGAGAG GGTATCTTGA AGAAGACACA
  W
  GGTCAGCCCA TAGGGAAAAA GAGAGAGGAA GGGATATCCA CATACAAGTG ACACCTACTA
  GGAAACCTTT AATAGCAGAA CTCTGTCTTC AAAACACAGG CTCCTGGGTT CCCACAAGAG
  TTAACGAAAG TTAAGGATGA GATAAACTGG CAGCCATGCC ATATACCCTC ATCACCATAA
  AGGACCTAGA TCAAGGGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51845271	NES14771364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36795336					SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51845271	NES14771364	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112854800 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636401	regulatory region 636401			1356 bp proximal
Srgap3	SLIT-ROBO Rho GTPase activating protein 3			Intron
				Noncoding-Transcript-Variant