rs3679541 SNP Detail

Summary

• ID
  rs3679541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118592373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC AGTGAGGCCT GTCTGCCAGT
  Y
  TGCCTACTGA GGGCTCAGGT CAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5055560	WI_WGS_2_119709219	WI	MOUSE	f	SNP			C	T
ss147311949	ENSMUSSNP5980140	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss320471647	CHEV_2_118587628	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3679541					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118592373 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc9b	coiled-coil domain containing 9B			Intron
				Noncoding-Transcript-Variant
Rr367276	regulatory region 367276			712 bp upstream
Rr563322	regulatory region 563322			1839 bp distal
Rr563323	regulatory region 563323			508 bp distal
Rr563324	regulatory region 563324			386 bp distal
Rr563325	regulatory region 563325			482 bp proximal
Rr563326	regulatory region 563326			759 bp proximal
Tssr25793	transcription start site region 25793			715 bp downstream