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rs3679559 SNP Detail
Summary
  • ID
    rs3679559
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:118592379 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTGAG GCCTGTCTGC CAGTTTGCCT
    M
    CTGAGGGCTC AGGTCAGGGT TTCAT                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
BALB/cByJ
C57BL/6J
DBA/2J
LG/J
SM/J
ss5055578 WI_WGS_2_119709225 WI MOUSE f SNP C A
ss147311954 ENSMUSSNP3484438 ENSEMBL ENSEMBL_Sanger f SNP C C C
ss320471648 CHEV_2_118587634 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
BALB/cByJ
C57BL/6J
DBA/2J
LG/J
SM/J
rs3679559 SNP C C C A C A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:118592379 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ccdc9b coiled-coil domain containing 9B Intron
Noncoding-Transcript-Variant
Rr367276 regulatory region 367276 706 bp upstream
Rr563322 regulatory region 563322 1845 bp distal
Rr563323 regulatory region 563323 514 bp distal
Rr563324 regulatory region 563324 392 bp distal
Rr563325 regulatory region 563325 476 bp proximal
Rr563326 regulatory region 563326 753 bp proximal
Tssr25793 transcription start site region 25793 709 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory