rs36795994 SNP Detail

Summary

• ID
  rs36795994
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:72971830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGACTAA ACCTCCGACA
  AAAGAGTATG CATGGAGGGA CCCATACCTC CTGCTGCTTG TATAGCAGAA CTTCTTTTTA
  GCCCACAGCC ACCTCTTCTG AAAGAAACAA CACCTCACAC TCTGTCTTTC CAGGTTCTGT
  TGCAGACAAA GACAGACTAA ATGTCTTTGG CTATGTGATT CAGAAGTAAA CGTATCTTTT
  W
  AAGGTTCTCT TTACACAAAG AATATATAAG TTATTATTTT AACAGAATTA CTCATCAAAT
  TTGCAGAAAT GTTTGCATAA ACACTGACCA TAGAAGCATC AAACATTAAA GAAAATGTTT
  TCTCTAAATT TATCTACATG CTTCTATTAA ATGTTTAGAT AAGATATTTT GATAAATATT
  AAATATATTT GTTTGTCTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50986112	NES13919801	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36795994					SNP	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50986112	NES13919801	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:72971830 () rs orientation: forward

Symbol	Name	Function Class
Gm20754	predicted gene, 20754	1854 bp upstream
Gm38353	predicted gene, 38353	1469 bp upstream
Rr578299	regulatory region 578299	1384 bp proximal
Rr578300	regulatory region 578300	1777 bp proximal
Rr578301	regulatory region 578301	1865 bp proximal
Tssr29555	transcription start site region 29555	1799 bp upstream
Tssr29556	transcription start site region 29556	1835 bp upstream
Tssr29557	transcription start site region 29557	1848 bp upstream