rs3679622 SNP Detail

Summary

• ID
  rs3679622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119826281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGTGGTAGA AAGCGCCAGT ACGCAGACGC AGGCAGATTA
  AAGTCGTTAA CCTGAGCTCT GCTGGCGCCC CAGAACACAA CCTTTCTTCC TAACTCAGGT
  R
  TCCCTACCTG CAGTCCCGGA TACAGAGAAA TTGTGGGTCG GCTTGGGGAT CGGCTGCTTC
  CATTCTTCAG AGGTCAGGAT TGTAATTTTG GTGTGAATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5055642	WI_WGS_5_117722210	WI	MOUSE	f	SNP	A			G
ss45827849	mCV24632714	ABI	CRAMUS_MOUSE	f	SNP		A	A	G
ss149174116	ENSMUSSNP5467385	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss321666003	CHEV_5_120138225	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3679622					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119826281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	837 bp distal
Cpgi16461	CpG island 16461	80 bp distal
Gm71505	predicted gene, 71505	within coordinates
Rr619145	regulatory region 619145	1628 bp distal
Rr619146	regulatory region 619146	1717 bp distal
Rr619147	regulatory region 619147	1127 bp distal
Rr619148	regulatory region 619148	42 bp distal
Rr619149	regulatory region 619149	within coordinates
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr48472	transcription start site region 48472	1351 bp downstream