rs36796248 SNP Detail

Summary

• ID
  rs36796248
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15894562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGCATC ACTTGATGTC
  CCTTCTCTGT GGTTTCTGTA AAAAACTGCC ATAAAACTTT GAAATTCTGC CTGAACAGTC
  CTCCCGTGGG AAGTTGGGGT GCAGGAGGAA AGGGATGGTA GCAGCTCCGA CATCTAGACC
  ACAGGAAACA GACCCGGCAG CCTTTGCATT AGAGTTGGCC AGACAGCAGG ACACCAGCAT
  M
  CGCTAACCAC ATTCAATGTT ACCAGAGCCT CCACCAGCCA CAACCATAAC TAAAAGCCAT
  AGGCTTCTGG TACCACGCCT TACCCATTAG CCAAGAGCAT CTACTAGTTT CACCCCTGCC
  CATTAGCCAT TGGTTTCTAG TACTGATGTT CCACCCATCA ATCATGAGCC TCCACTAGCC
  ACGCCCCTGC CAAGCAGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51880843	NES14893771	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36796248					SNP	A	A	A	A	C	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880843	NES14893771	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15894562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18359	CpG island 18359	1327 bp distal
Rr155078	regulatory region 155078	639 bp proximal
Rr160786	regulatory region 160786	1439 bp proximal
Rr164335	regulatory region 164335	20 bp proximal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates
Tssr64587	transcription start site region 64587	443 bp downstream
Tssr64588	transcription start site region 64588	427 bp downstream