rs36796968 SNP Detail

Summary

• ID
  rs36796968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130066559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAATTC CCAGCAACCA
  CACAGTGGCT CATAAACATC TGTAATGGGA CCCGATGCCC ATATATGACA GCTACAGTGT
  ACTCATATAA ATAAAATAAA TCTTTAAAAA ATTTAATAGC CAATAAATTT CAAGAAAAGT
  TATATATGCA TTTACACTCA GCCCTTTCTG CATATATGAT TCATAACTCT TTGTGTAGCA
  Y
  GGTGGACAAA CAATTTCCTT AGACTGAGAG GGATGATAGA CAGCACACGC TCGCTCGCTC
  TCCATGCCTT CTCTATTTGT TAGCAGAGAT GAGGACTGCT CAATCAGAGA AGCTGAGTCT
  TCACTGCAAG GCTTATATAT GAAGTGTTAT AATTTGTAGT AGGATAAATC TTGGCACAAA
  ATTTCTCTAC TTGTCCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50471521	NES14118769	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
ss61062774	NES16064209	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36796968					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50471521	NES14118769	PERLEGEN	MM_PANEL	f	SNP	C/T
ss61062774	NES16064209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130066559 () rs orientation: forward

Symbol	Name	Function Class
Ate1	arginyltransferase 1	within coordinates
Tssr75150	transcription start site region 75150	984 bp upstream