rs36797882 SNP Detail

Summary

• ID
  rs36797882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128845460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCAGGAA GTGTATTCCC
  TGTCTGATAG ACATAGATTT CCCTGAGCCT AACCTAAACG TGACATAGGC TTTCTCTGTT
  AAACAGCGTG CGAAGGGTTT GCGGTAGAGG CAAGGCTCAC TACAAAATGA TTCCCCCAGA
  GATGTTATAA AATACATTCT AAAAACATAG AGCATGGAGG AGCAGAGTCA GGAGCCGCAG
  R
  CCATGCAATC CTCCTTACAA GTGGAACTTA GTATCTACAC TATGAGGCAG CTTTCTTTCA
  AAATAATATT TCCATTTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTATGCC
  ACATGAGTTG GGGTTATCGG CAGTTGTGAG CCACCAAGCA TGGGTGCTGG GAACCAACTG
  GGGGTCCTCA GCAAGAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51843339	NES14704486	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A	G	G	A		G	A		A
ss149245188	ENSMUSSNP3108907	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321688096	CHEV_5_129274271	CHEVERUD	SCREENING_POP	f	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36797882					SNP	A	A	G	G	G	G	G	A	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843339	NES14704486	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128845460 () rs orientation: forward

Symbol	Name	Function Class
Gm42875	predicted gene 42875	1637 bp upstream
Rimbp2	RIMS binding protein 2	within coordinates