rs36798294 SNP Detail

Summary

• ID
  rs36798294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63283126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAGGG ATGCCATTCG
  GGGTCAAAGA CTGGAGGCTG CTAGCTCACC TAAGGTGCCA CATGCTTGGC TTAGACCCAA
  GCATGGCCTT GGTGGTACGA GCATCTAGCT TTCAAAATGA AATTATAGAT ACCACCATTT
  CATTTTTTAT CAACCCAAGG CAGTAAATGA CACCACTCAG TGTTCTCTTA TAGTCCCTGT
  R
  AGTCAGACGG CACATCTGCC TGTTAAAACA TTCTTCCCCG TACACCAAAT TCTCCTGCTG
  AGTTACTGTG GACATACATA TATGTCACCC TGTTAATGTC AACTGACTAG AAAGATGCAC
  GTGGACTGAA GTATATGGGG ACACTACAGG AAACAAAAGT AAATTTGGGG GCCAGGGAGA
  TGGCTCAGCT GGCAAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52026092	NES15043516	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36798294					SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52026092	NES15043516	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63283126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21914	CpG island 21914	1423 bp proximal
Map2k5	mitogen-activated protein kinase kinase 5	within coordinates
Rr401444	regulatory region 401444	1900 bp upstream
Tssr90089	transcription start site region 90089	1780 bp downstream
Tssr90090	transcription start site region 90090	1970 bp downstream
Tssr90091	transcription start site region 90091	1991 bp downstream