rs3679911 SNP Detail

Summary

• ID
  rs3679911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107352264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAGTGTA GGAAACCTAG
  TTGGTTAAGG AGTGGCCAGA GTGAGAACTT GATGGTGATA TTTGTTTAGG AAGAATCATA
  CCTTCTCCTG GAAATAGGCA GGACGTTAGG GAAGATTCCG ACTCAGGAAA GGCAAGGTCA
  AGTGGGATCA GAAAACACAG AGAGGACAAG GGTCTGGTCT TGAGCCTCGT GGTTCTCAGC
  Y
  ATCATTGGCC CTTGTCATCC TAATGGCTTC TGTGTCCCTC TCTCCATTAA GGCTAAGTAA
  GAGTCCCTAG CTGCACAGCC CGACTTCAGC TCTGTCTCTG CCATGCACTG GGAGAGTCTG
  TTTCCTTGAG GGAAGCTTTG GCAGTGTTTA GGAGGTCTAG GGAAGTGGCT GGGTACGACC
  CTGTGGGCTA GGCCTAACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5055932	WI_WGS_3_107937818	WI	MOUSE	f	SNP	T							C
ss45436283	mCV24801964	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46855656	NES10710859	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C		C	C	T	C	T	T	C
ss135584065	ENSMUSSNP329613	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3679911					SNP	T	T	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855656	NES10710859	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107352264 () rs orientation: forward

Symbol	Name	Function Class
A330043J11Rik	RIKEN cDNA A330043J11 gene	1972 bp upstream
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	1952 bp proximal