rs36799769 SNP Detail

Summary

• ID
  rs36799769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140703365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCCACC CGAAACCCCG
  CCTTTGAACA TAGTCCGACC CCAGACTGCC CTTCCAGAGG TCAGGGGCCC TAGACCAATC
  CCAGACGATG CCCCCAAGCC AGCGAGCCAC CCCTCGCAGA AGCAGTCTCG AGTTGAAGTT
  ACTGCATTCA GCTTTGTCTG GGCGAAAGGA GGCGTGGTCT CTGATGGGGA GAAACACCCA
  Y
  ACTAGGGAAG CTAACTCTCG CCTCCAAGGG AGCTCACCAG AGAGGTGCAA GGACGGGGCG
  CAAAAGGATG GATGGCTTGG AGGCAGCCGT TCGTGGCGTT ATTGGTAAGG GATAAGCCGG
  TAGCTAGCCG ACCAGCGCAG GATTCTACTT CGCTTGGCCC GGCATCACCT CGCCTTACGT
  ATGTACAGGC CATCGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ
ss50482331	NES14107142	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ
rs36799769					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50482331	NES14107142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140703365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19919	CpG island 19919	within coordinates
Gm33560	predicted gene, 33560	within coordinates
Gm73068	predicted gene, 73068	28 bp upstream
Gm73077	predicted gene, 73077	within coordinates
Rr400707	regulatory region 400707	121 bp downstream
Rr657849	regulatory region 657849	1425 bp distal
Rr657851	regulatory region 657851	601 bp distal
Rr657852	regulatory region 657852	within coordinates
Rr657853	regulatory region 657853	112 bp proximal