CCTATTTCTT GACTAAGTTA TAGACCATCA GATTTTTATT GACAAAGTTC CATACAGGCA GAAGGTATTC TCTCTACAAA GAACATTTCT TATGTCTGTT TTAGAGAAAT ACCAAGTTTG GCCTCTATAG AAATAAATAT TAGCTTTTAA ACTATTTTGT ATGTATGTGT GTGACTTGCT TTTTCTTTAA TCATTTTGCA R TGTGTATGCT TACACATGTA AAGACATACA AAACTTGGAG ACAGAAAAAA AGAACCTTTG TTTCAGGAAA AAAAATATTT GATAATAATG GCTATAAAAT TTGAATGCAT ATTTTATTTA CTTGGGAGAT TTCCCCAAGA CTCCCAAGTG GTTGATTTTT TTTTTTTTTA TAAACCATGT CCTTGAAAAT TTTTATAAGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51676385 | NES14641204 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | G | A | A | G | A |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs36799883 | SNP | A | A | A | A | A | A | G | A | A | A | G | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51676385 | NES14641204 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:159225286 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Depdc1a | DEP domain containing 1a | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr588123 | regulatory region 588123 | 1934 bp distal | ||||||
Rr588124 | regulatory region 588124 | 1736 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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