rs36800924 SNP Detail

Summary

• ID
  rs36800924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113368360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCAGTCTA GTTGAAAGTC
  TGCCTAGGGT AAATGAGACC CTGTCTCAAA GGTGTTGGAA TCAGAACTCT GGACTGGGCT
  TGGCTGTGCT GAGACAAGTT TTGTACTGAC TTGGAGTCCT GATGTTTACA TTTTCTGTGA
  GTTCCTTGGT CACTTACAGA CTTGGCCAGA GTGAAGCATA ACTTCTGCGT CTTTCCATTT
  Y
  TTCAGTTGGT AAAAGTGATT TATTTTTACT TTTTCCAGTT AGTGGAAGAG GCGGAATGTG
  CTCTGACCCT TATCTTTGTC ATCCTATACA CAACCTTGGC TTTATTATTT ATCCCCAAAG
  ACTTTACGCC ACCTGCAGCC AGGCCTGCAA GGCTTATCTG CTGCCCTTAC CAGGTCCAAG
  CCTCACCAGC TGCCTTTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841813	NES14761269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36800924					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841813	NES14761269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113368360 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	951 bp downstream
Cpgi17842	CpG island 17842	768 bp proximal
Rr636505	regulatory region 636505	641 bp proximal
Tssr58207	transcription start site region 58207	683 bp downstream
Tssr58208	transcription start site region 58208	1018 bp upstream
Tssr58209	transcription start site region 58209	1111 bp upstream
Tssr58210	transcription start site region 58210	1663 bp upstream
Ttll3	tubulin tyrosine ligase-like family, member 3	within coordinates