rs36801312 SNP Detail

Summary

• ID
  rs36801312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43388337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAATAAA TAAAAAATCA
  GAAAGCTTCT CCATTTGAAA ATTTTATATA AGTACCCTCT TAAGACACAT ATAGGAAACA
  CAAACATTAG TGAGGGCTGA AAGAGATAAG TGGTTCTTTC AAGATGGATT GTTAGATGTA
  AAGATAATTA GTGCATCTTG GTCTTCAGTG CTCAAAGCCA TCATTAAGTA GTGAACTAAG
  Y
  TGTAAACAAC TTACAGAGAA AAGAAACATG CATGACAGGG TGAACAACAG CTTCAGAGAA
  GACCCCAACT CTCATCTTGT CTCAGCTTCT CTAAGTTTTG ACTGCTACCA CAAAAGACAC
  TAGGAAAGAA ACCAAGCTCC TGGCTTTTAT TATCTGGGTG CATTCCTTCT CTGTGGGTTC
  ACCATTTCTC AAAATACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ
ss51293719	NES13781520	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ
rs36801312					SNP	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51293719	NES13781520	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43388337 () rs orientation: forward

Symbol	Name	Function Class
Gm38800	predicted gene, 38800	691 bp upstream
Tpk1	thiamine pyrophosphokinase	within coordinates