rs36801773 SNP Detail

Summary

• ID
  rs36801773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18708793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCACTT GAGTTGAGGT
  GGTGACAAGC AAGGTTAGTA GGACAAAGGA ATTTACAACT CACGTTCCCA GAATTGATAA
  GGTCCTGCAG CCAGGTGTCT GCAGCTGGGG AGCTCGAACA AACGTCCACA GGAATGTTAA
  TCATTTTCTC ACCACAGGAC CTTAGTCACA GGTTCCTGGT AAAAGTGAAA TCGGACCCTC
  Y
  GGTTTAAGCG AAGCTAAATG TTTTCAGTCA GTGAACATTG CGTTTCTCCC TTCTAGATTA
  AGCACCTGGG AAATGTGTTG GGCAATTCTT TGCACAGCAC CCTTCCCATT CTTCTCACAA
  GCTGAGAGGT TTATCTGACT GTATGGTGGA TATAAACTGA AGGACAGCAT TCAATGTCTG
  AAGACTGAGG CAAGTTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50685044	NES13607320	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36801773					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685044	NES13607320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18708793 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	1312 bp upstream
Gm50202	predicted gene, 50202	444 bp downstream
Gm59201	predicted gene, 59201	64 bp upstream
Tssr155454	transcription start site region 155454	812 bp downstream
Tssr155455	transcription start site region 155455	780 bp downstream
Tssr155456	transcription start site region 155456	740 bp downstream
Tssr155457	transcription start site region 155457	within coordinates
Tssr155458	transcription start site region 155458	1311 bp upstream