rs36802755 SNP Detail

Summary

• ID
  rs36802755
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42773980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGGAG GGGCAAAAAA
  TTAATTGTCC TAAATCCTTC TCTGTATATA AGCTATAGTT CCCTCCGCTT GAGGTGACTG
  TCACCACCTT CTGTCTTACT ATGAGCTCCC AAGTCTGTAC ACAAGTTCAG GATGAACTGA
  AAGCTGCCCG TTCATCTCAC TGTGTAACCA ACTCAGCAGT CAGCTTGCCT TTTCTCACCC
  K
  GGTGAACAGC GCTACCTTGA GTTCCATCTC CTGGATGTTC TGGGGAAGTC CACAGCTACA
  CACCATCTGC ACTGTGGACT CCGGGGCCCA GTTTTACAAA GCTGCCCTGA GCACACACCA
  CACAGAGCAC TCGGCAACAC ACATGGCCTT CACTTAAATC CCAGCAGAAG TGTCTCCAAT
  TGTGACAAAG TTAATGTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52008969	NES15031352	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36802755					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52008969	NES15031352	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42773980 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	555 bp upstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr677286	regulatory region 677286	1155 bp distal
Rr677287	regulatory region 677287	718 bp proximal