rs36802828 SNP Detail

Summary

• ID
  rs36802828
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60744624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGACCTGG CTGTCATAGC ATTCCTCTTG CCTGTCCTAG
  ATTGCCTTGG CTAGATCTCT AAGGAATACT GGGTAGATTT CAGAATTTTA GAAATGGCAG
  S
  CAGCGGGATG GAGAGACAGA TCCAGGCGGA GCACTTGTCT GGCCCGCACC AAGGCCTTGT
  ATACATCCCC CAGCCCTGTG TGTGACACAG GGCATGGTGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418252	NES13463272	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36802828					SNP	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418252	NES13463272	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60744624 () rs orientation: forward

Symbol	Name	Function Class
Rr538593	regulatory region 538593	1458 bp distal
Rr538594	regulatory region 538594	1211 bp distal
Rr538595	regulatory region 538595	1689 bp proximal
Synpo	synaptopodin	within coordinates
Tssr153456	transcription start site region 153456	1484 bp upstream
Tssr153457	transcription start site region 153457	1440 bp upstream
Tssr153458	transcription start site region 153458	1869 bp downstream
Tssr153459	transcription start site region 153459	1949 bp downstream
Tssr153460	transcription start site region 153460	1978 bp downstream