rs36804909 SNP Detail

Summary

• ID
  rs36804909
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127499386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCTGCC GTTCCCTGCC
  CCCCAAACTC TACCTCTTGT TTCAGTTTCT TCAGTGGTGG GCCTCCCAAT TCTTCAGAGT
  GAAGCCTGCA AAAAAAACGG AGAAAAAAAA ATGAGTGGAA TTAGGAAGGG CCCCACAACT
  CCACAACCCA CGGGGTGCAC AATCCGGCCA GGAAACATGC AGTACTTAAA ACTGCAGGAA
  K
  AAGCTGGTTG GACAGGAGTT GGAAGTCCAA TCATTATGGG GGGCGGGGGG GTTGGGAACA
  GAGAGCAAGC TTCAGACAAG TTTAAGTTGA GTTGGCAAGG TGAAGACATG CAGGTGGGTG
  GGAAGCAGGC CTAGAGCCGC CTGAGCCACA AGTGGGGAGA GCCAAGTCCT TGGCAGGATT
  CCAACCAAAT GGCCCTGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947351	NES14151037	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36804909					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947351	NES14151037	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127499386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2370	CpG island 2370	617 bp distal
Gm16229	predicted gene 16229	322 bp upstream
Nab2	Ngfi-A binding protein 2	within coordinates
Rr402332	regulatory region 402332	1156 bp downstream
Tssr99811	transcription start site region 99811	1850 bp upstream
Tssr99812	transcription start site region 99812	36 bp upstream