rs36807340 SNP Detail

Summary

• ID
  rs36807340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140704783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCGGGG AATAAAGGTG
  TGTGCCACCA TTTCCAGGCA TCCAACATCT TACATGGCTA CTGTAAGGGA GACTTAAGGG
  AGAATCTCTT GAGAAACCCA CATTCCCGCT TGGGTGTGTA CAACTGTCTT CCCCATATGC
  CTATTACCCA CCCCCCTACC ATGTGTAGAC CTGTGTTAAA TTCTCTTCTT AATTAATTCC
  R
  GCTTTACTTC ATTCTGACTC ACCCTGAAAT CTCCTGGGGT GTAGTCAAGA AGTCCAGTTT
  CAAAAGCTCA GCATAGATAC AGCCCCACTG CTGACAAAAC CCTAATCAAA TAAGACTGAG
  TAGGACACAT GCCCATAATC TCAACACTAG CTACCTGAGG CAGAAAGGAT GGCTGCATTT
  CTAGTCAGCC TGGGCTACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss50482321	NES14107126	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs36807340					SNP	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50482321	NES14107126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140704783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19919	CpG island 19919	1115 bp distal
Gm33560	predicted gene, 33560	within coordinates
Gm73068	predicted gene, 73068	within coordinates
Gm73077	predicted gene, 73077	1296 bp upstream
Rr400707	regulatory region 400707	1539 bp downstream
Rr657852	regulatory region 657852	1380 bp distal
Rr657853	regulatory region 657853	806 bp distal