rs36807538 SNP Detail

Summary

• ID
  rs36807538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:41034166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGAACA CTGTCTTCAT
  TCTTTGGGAT ATTGGAGCAT GGTGTCAACC GTCTAGTGCA GGACTCAGGG CTGTAGAAGA
  GAATCAGGAG AAAAACACAA CAGAAGATTG ACTGCGTACA GAAAGCTTGG GCTGATGTTT
  GTCTGAGGTA GAGGTTTAAA GAACGCAAAC AAAAGAAAGC TCTGCCATCC AGTTTTCTTC
  Y
  TTTTACTACA AACAATGAAG CTAAGGCAGA GGAGGATGGA CAGGCAGGTA GAGATATAAA
  CCATGACCAA AATACACACT CCATTATTTT CTCCCCTCCT CCTGAGGTAC TGTGATTGCT
  TATCCAGCAT GCTCAGCAGT AGATTTAGTA AGAATGAATC CTCATGAATT CCGGAATTGC
  CTCCTGTGAA CCACTGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51242036	NES14285459	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36807538					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242036	NES14285459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:41034166 () rs orientation: forward

Symbol	Name	Function Class
Gm70541	predicted gene, 70541	within coordinates