rs36807626 SNP Detail

Summary

• ID
  rs36807626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73969709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGGCTT TGGCCTTTGG
  CTGGATTGGT TGAGTCCTTA CTGGCAGGGA GACTGGGAGG GAGAAGATGA GTTGTAGCCC
  ATCCTCTATT TATCTCCAGC AGTACTGGCT CCTGGGTGGG CAGAGACAGC TCCCACCCTG
  CTAGGGAGCT CACCCTCTCT TGTTCATCTG CGCTTTTCAG TCACCTACTG GAACAAACCA
  Y
  GGGCTTCTGC CAAGATCTCA ACCCACACAT TAGGTAAGCA CCGCACTCTA CGCTAAATTC
  TCTTTTTTAA AAGCCCATAT TCTGCCAACA GGAAGCTAAG AGAAAGCCCA CAGTCGGAAG
  AGTCACGCCC AATCAACCAA GGTAGTGAAT CTGTCCCTGC TGAGTGCCTA CTGGGCTCTG
  CTTCCCTGTC AAGGGGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276620	NES14517787	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36807626					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276620	NES14517787	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73969709 () rs orientation: forward

Symbol	Name	Function Class
Rr34544	regulatory region 34544	within coordinates
Rr371521	regulatory region 371521	1755 bp upstream
Tns1	tensin 1	within coordinates
Tssr12217	transcription start site region 12217	1192 bp upstream
Tssr12218	transcription start site region 12218	166 bp downstream
Tssr12219	transcription start site region 12219	235 bp downstream
Tssr12220	transcription start site region 12220	259 bp downstream