rs3680797 SNP Detail

Summary

• ID
  rs3680797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:69149808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCATTAG ATGAAACTCT
  CTTAATTTTC TTAGGATCAA AATAATATAT TTTTGACAGT AACTCTGTAC TTTACTCCTA
  TTTTTCTTTG TCCAGCCCCG CCCAGCTTCC CTCGCTCCTG GACTCTGCTG CTGACTTCAT
  CCGTAGCTGC TTGTAAAGGA ATAACAAGCT TTTTATTTCT GCCCTCTTGC AGAGTCTAGA
  R
  GAGTTTGTGT CAATTCTCTT AGAATTGAAC TTTCTAGGTG GAGTCAAAGC CCCAAAGCAT
  GAGTATTCGG GAACGAGGGC CCCCTTGCCT CACCCCACGC TTATCTACAG CTGTCCAAAG
  GATTCTATTT TTTAAAAGGG ATATTTGAAT TTTGCTACCA GGGTATGTGA AGACCAGAGG
  GCGCCAGCAA CTACACTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5056827	WI_WGS_17_67984754	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3680797					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:69149808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9445	CpG island 9445	567 bp distal
Gm49949	predicted gene, 49949	1212 bp upstream
Rr530161	regulatory region 530161	976 bp distal
Tmem200c	transmembrane protein 200C	within coordinates