rs3680837 SNP Detail

Summary

• ID
  rs3680837
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57071899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGT TGACCGCCTG GTTGCGACTC
  K
  CCTGGCCGCT GAGTTTAGCT GCGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J
ss5056867	WI_WGS_2_57713294	WI	MOUSE	f	SNP	G				T
ss38063610	NES09349966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		G	G	G	T		G		G	T
ss146633791	ENSMUSSNP1015053	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G					G
ss320314312	CHEV_2_57034298	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J
rs3680837					SNP	G	G	G	G	T	G	G	G	T	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38063610	NES09349966	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57071899 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	within coordinates
BB557941	expressed sequence BB557941	133 bp upstream
Cpgi11661	CpG island 11661	within coordinates
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	191 bp upstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	507 bp downstream
Rr396968	regulatory region 396968	92 bp upstream
Rr557184	regulatory region 557184	145 bp distal
Rr557185	regulatory region 557185	69 bp distal
Rr557186	regulatory region 557186	within coordinates
Tssr24122	transcription start site region 24122	125 bp upstream