rs36809657 SNP Detail

Summary

• ID
  rs36809657
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190713237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGGAAC ATCTAGGAGC
  CTGTCTGTCA ACCATGGGAA GCAAATCTCC CAGCTGGACA CCATGGGGAA GAGCCCTGCC
  TAGGACTAGT TTCTGGCTGC TCAGCTCTAT GTGGGAGTTG GGATGGAAAC CTCTATGAGG
  CAGGCAGGGT GGGAGCCAGG ATCAGTAGAG GATCAATGGA GGCAACCTGG GTTCTAAACC
  K
  ACCAGGACAG AGCCCTGGGC ATGAGACTAT GGATGGAGTC ATCACTGAGC ACAGTAACGC
  CAGTCTATGT CAGAACATTC TTAACGGTCC TCGGGCAACA AGCACACCTG GGAAAGAATC
  AGGAGGGAGA AGACAATGTG TGCCCAGGGA ATCTCGTTCC TAATTAAAAG GAAACCCACC
  TGTTTGCTCA TCCCAAACGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51424356	NES14445750	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36809657					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51424356	NES14445750	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190713237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1214	CpG island 1214	1432 bp distal
Tssr15742	transcription start site region 15742	1886 bp upstream
Tssr15743	transcription start site region 15743	1862 bp upstream
Tssr15744	transcription start site region 15744	1850 bp upstream
Tssr15745	transcription start site region 15745	1808 bp upstream
Tssr15746	transcription start site region 15746	1768 bp upstream
Tssr15747	transcription start site region 15747	1738 bp upstream
Vash2	vasohibin 2	1744 bp upstream