rs36810953 SNP Detail

Summary

• ID
  rs36810953
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:81934992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTTTTA TTTCATTTTT
  TTTTTTTTTT TTTTTTTGCT AAGGATCAAA TTTAGGGCCC ACTGCCTGCT AAAGGCTTTA
  CCACTCCTGC GCCTCTCGCT TGGCTGCTAA GGGGAGAGTA AGTGCTTTTT GGTTGTTTTT
  CAGGAATGAA GTCAGTGAAA TAATTCTTAT CCTGGTGAAG GTAAAAGCTC TGACTCAAGC
  S
  GAATCCCTCA GAGAAGAGCG TCCCCTGGAG CCCCTCCCAG CCCAGAGTAC AGGTGTTTGA
  GTGCGCCGTG TGGGAGTGCC CAGAGTCAAG ATGACCGTGT CACAGCCGAT GCCGCCTTTG
  CTGGGTGCCC ACTTGGGGTG TGGCCAGGCC TCCTGATGCT TCGTAGCTGA GGGAAGTAAT
  GCACAGCAGC AGCCGAGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51348097	NES13741143	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs36810953					SNP	C	C	C	C	C	G	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348097	NES13741143	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81934992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gcfc2	GC-rich sequence DNA binding factor 2			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Mrpl19	mitochondrial ribosomal protein L19			mRNA-UTR
Rr632566	regulatory region 632566			1405 bp distal