rs3681100 SNP Detail

Summary

• ID
  rs3681100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34933074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC CCGGACAAGC AAATTGTCAA
  Y
  TTAACCGTAG TGGTCAAGTC GAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss5057134	WI_WGS_7_25731549	WI	MOUSE	f	SNP				T			C
ss60993608	NES16129821	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	C		C	C	C		T	C		T
ss322156702	CHEV_7_36018668	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3681100					SNP	C	T	C	T	T	C	C	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993608	NES16129821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34933074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	910 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1700 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1121 bp downstream
Rr645337	regulatory region 645337	264 bp distal
Rr645338	regulatory region 645338	106 bp proximal
Rr645339	regulatory region 645339	982 bp proximal
Rr645340	regulatory region 645340	1044 bp proximal
Rr645341	regulatory region 645341	1711 bp proximal