rs3681198 SNP Detail

Summary

• ID
  rs3681198
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40761197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATTAGT TGTTCAGTTG
  TACAAACATC CATTGACATT GTAAATTTAA TTGGTAAACT TTCATTTTTC TAATTGTTGG
  GAGCCGCATA ACACAAGTAC AGATGCAGTC CCATTTGGAA CTCACAGGAA CAGTTTATCT
  TTGATCTAAG TTTCTGTTAG GGAAAGTATT TTTATTTATT TTGAATATTT GAATAACGTA
  S
  TTATATATAA AATTTTCCGT TTTAATAAGA AAAGTTTTGT ATTTGTAGAA TATTTGAACA
  TCCGATTTAC TAATCATATC TTTCATTTGA ATGAGAGGGA GGATTTAATA TGGGAGGAGA
  AAAACTCCCT AACTTGGATT TTAATTTTCA CTTAGTTCTT TTTAAAGTAT ATTTTATTGC
  CAGTTACAGT TTTTTTCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5057233	WI_WGS_10_40973400	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3681198					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40761197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1464	CpG island 1464	471 bp distal
Rr401845	regulatory region 401845	1662 bp downstream
Rr430264	regulatory region 430264	1364 bp distal
Rr430265	regulatory region 430265	1424 bp distal
Rr430266	regulatory region 430266	56 bp distal
Rr430267	regulatory region 430267	444 bp distal
Tssr93031	transcription start site region 93031	1718 bp downstream
Tssr93032	transcription start site region 93032	1693 bp downstream
Tssr93033	transcription start site region 93033	1603 bp downstream
Tssr93034	transcription start site region 93034	1567 bp downstream
Tssr93035	transcription start site region 93035	1339 bp downstream
Wasf1	WASP family, member 1	within coordinates