rs36814498 SNP Detail

Summary

• ID
  rs36814498
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33898757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACAGCT CTCTTTGCAC
  GGATAGATAC ACTCCCAGGA CTTCCAAAAC GTGCAAATCT GGAAGCTCGG GTGCTCCAGA
  GGACCACAAA GTTCGGGGAT GGAAGGCATA GGCTCCTGGG GTGCCAGGAT GGTGGACTAC
  AGGATAGCAG GATGGACGAC CACCAGATTG AGGGATAGTA TAATACCCAA AAGTGGCTTC
  D
  GATTTGTTCT TAAGTCATAT ATAAGGGACC ATGATCTGGG AACACAGATC CAGGCTGCCC
  CAAATAGCAT GTTCTCGCAT GGAAACTTGC TTCACTACGT TTTTGTAATT GCAGAAGAAA
  AGGAAGCAAT AAATCAAGGC ATTTTTCCAA TGCATTGATG AAAACATCAC CAAAGACTGT
  TAGTATTGGG TTTGAGATGG                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
ss51450274	NES14437877	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	T	A	T	A	T		T	T
ss134758215	ENSMUSSNP3061677	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A				A				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
rs36814498					SNP	A	A	A	A	T	A	T	A	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51450274	NES14437877	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33898757 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	298 bp upstream
Rr575077	regulatory region 575077	within coordinates
Tssr32964	transcription start site region 32964	360 bp upstream
Tssr32965	transcription start site region 32965	295 bp upstream