rs3681462 SNP Detail

Summary

• ID
  rs3681462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57071995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG GATTATAAAA AAGAAATGCA
  Y
  TGTGGAATCT GCTAAAGTCA GACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss5057498	WI_WGS_2_57713390	WI	MOUSE	f	SNP	T		C
ss146633800	ENSMUSSNP6952873	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T		C
ss320314314	CHEV_2_57034394	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs3681462					SNP	T	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57071995 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	within coordinates
BB557941	expressed sequence BB557941	229 bp upstream
Cpgi11661	CpG island 11661	within coordinates
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	95 bp upstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	411 bp downstream
Rr396968	regulatory region 396968	within coordinates
Rr557184	regulatory region 557184	241 bp distal
Rr557185	regulatory region 557185	165 bp distal
Rr557186	regulatory region 557186	within coordinates
Tssr24122	transcription start site region 24122	221 bp upstream