rs3681600 SNP Detail

Summary

• ID
  rs3681600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51260439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAC CTGATAGCAT TCTTAACTTT
  Y
  AGCTTGGTAG AAGCTTTGTG TCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5057638	WI_WGS_3_51787349	WI	MOUSE	f	SNP	T			C
ss135172818	ENSMUSSNP2373451	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320762364	CHEV_3_51156940	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3681600					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51260439 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	353 bp proximal
Rr576283	regulatory region 576283	535 bp proximal
Rr576284	regulatory region 576284	1194 bp proximal