rs36817197 SNP Detail

Summary

• ID
  rs36817197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47954891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTTGTAT AAGCAGGTAG
  CGTGTCAACA CTGAAGTCCA TTTCAACCAA TGTGACCACG ATGTCCAACA GTGTGGGTTT
  GGTTCTGGCT GTGTGTTCGC AGTATGACTT GGCACCTCTC CGGATTTCTG AGATGTAGCT
  AAACAGCATT TCCCTTAAAC CCCGCCTCTT TCAGCAAGGA GCTCACAACT ACTTGCAGGG
  Y
  CTTCCTCTTG GCCTGATGGT AGTTATCAGC AGGATTAGTG GTCTCATTCT GGAGCCACAA
  GGCCCTGCCT CCATGTCAGC CATCTTGCTC TCAAGGAATG TGAGTCTCTG ATATTCTTTT
  CATTCCTCTG TTGTTTTGTT CTGTGGTTTT GTACTTTTTG TTGTTAGAAT CATTCAGGAT
  TGAATGTTAA ACTCACGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51246476	NES14286110	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36817197					SNP	T	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246476	NES14286110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47954891 () rs orientation: forward

Symbol	Name	Function Class
Gm19206	predicted gene, 19206	within coordinates
Rr371240	regulatory region 371240	32 bp downstream
Tssr6618	transcription start site region 6618	1706 bp upstream