About   Help   FAQ
rs36817232 SNP Detail
Summary
  • ID
    rs36817232
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:97873482 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACAGACAGTC CTGGGACCAT ATTTGGGCAT GCCTTATAGA
    ACCAAGGACT AGTAAATACA ACCGGAAGAA CAAAACAAAG AACAAAACAC AAGTCACCAT
    R
    TCCTTTCCAA TGATTTTTTT TTTTTTGGTT TTTAATATCA ATTGATGTTT TAAAAAATAC
    AGAGGTGTTT GACACAGAAT AGCACCATTG TGTAGGACAC                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51763563 NES14551330 PERLEGEN MM_PANEL2 f SNP A A A A A G A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36817232 SNP A A A A A G A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51763563 NES14551330 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:97873482 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Col2a1 collagen, type II, alpha 1 1 bp downstream
Rr508999 regulatory region 508999 1808 bp distal
Rr509000 regulatory region 509000 1210 bp proximal
Tssr4707 transcription start site region 4707 1287 bp downstream
Tssr132910 transcription start site region 132910 2 bp upstream
Tssr136189 transcription start site region 136189 67 bp downstream
Tssr136190 transcription start site region 136190 98 bp downstream
Tssr136191 transcription start site region 136191 311 bp downstream
Tssr136192 transcription start site region 136192 417 bp downstream
Tssr136193 transcription start site region 136193 459 bp downstream
Tssr136194 transcription start site region 136194 507 bp downstream
Tssr136195 transcription start site region 136195 523 bp downstream
Tssr136196 transcription start site region 136196 542 bp downstream
Tssr136197 transcription start site region 136197 555 bp downstream
Tssr136198 transcription start site region 136198 1077 bp downstream
Tssr136199 transcription start site region 136199 1123 bp downstream
Tssr136200 transcription start site region 136200 1141 bp downstream
Tssr136201 transcription start site region 136201 1197 bp downstream
Tssr136202 transcription start site region 136202 1251 bp downstream
Tssr136203 transcription start site region 136203 1676 bp downstream
Tssr136204 transcription start site region 136204 1769 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory