rs36817339 SNP Detail

Summary

• ID
  rs36817339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70314068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGTTCT GCAAATGACT
  AACACTGGGA GAATATCTAA ATTGGTAGGT AGATAGGTCC CAGAATGAGG CAGAACTCCA
  ATTCTAAACT TGGTAGAAGC TATTCATGAT GAATCTTCGC TCTAGGCTCT TCTTAGTAGA
  CCACTGATTG GTTTTTCTAA ATCTGCCTGC CTCCAACTCA GTGACCTTGG ATGAGTTCCC
  R
  AGCACTGGAA ATGCTCTAAC CCTGGGTGTG AGATCATGGG AAGCTCTGGC AGAGCAGTGG
  CCAGCACATC TGCATGGGCT CAGTAAACTT GGTAAATGGG CTTCTGGCAT CTTGTAGGGC
  TGCTGTGGTT CACACGAAAG TGGCTCTCAG GGCAAGCCAA GTGTTTTAAG GACTGGCAAC
  ATTAACAGAT GTTAATAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52027693	NES15045280	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36817339					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52027693	NES15045280	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70314068 () rs orientation: forward

Symbol	Name	Function Class
Ccnb2	cyclin B2	906 bp downstream
Gm69197	predicted gene, 69197	1728 bp downstream
Mir5626	microRNA 5626	1033 bp upstream
Rr197017	regulatory region 197017	1933 bp proximal
Rr204787	regulatory region 204787	647 bp proximal
Rr204788	regulatory region 204788	1932 bp proximal