rs3682032 SNP Detail

Summary

• ID
  rs3682032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34523587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTATATA GTGAATTCCA
  GGATATCCAG GGCTATATAG AGAGACTCTG TCTCAAAAAC AAACAAACAA ACAAACAAAC
  AAACCACCCC ACACTTAACA TGAGTCAGGG TGTGACTCAG TGGTTAAGTG CTTGCCGTTC
  ATCTATGAAG CTCTGGGTTC TTAGGCAGCA CAGGGATGTG GAGGGGGCGG TAGATCTTGC
  R
  ACTGAAATTA AAGTAGACAG GGTGTGATGC TTGCTACTTC GTGAGGATCT AGAGTCAGCT
  GGGAGACAAG CCTCTGAGTA GGCCTGTGAG GGACAGAGAC ATTCCGTCAG CCACAGTTGT
  TAACTGATTG GCATTGCAAG ACAAGGAAAG GGGGGAGGGG GAGGAGGCTA TGACGACAGT
  GGTGGCAATG ATACTTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5058072	WI_WGS_1_34940336	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3682032					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34523587 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	1066 bp proximal
Gm32566	predicted gene, 32566	within coordinates
Rr409035	regulatory region 409035	1918 bp distal
Rr409036	regulatory region 409036	1660 bp distal
Rr409037	regulatory region 409037	57 bp distal
Rr409038	regulatory region 409038	within coordinates
Rr409039	regulatory region 409039	730 bp proximal
Rr409040	regulatory region 409040	1417 bp proximal
Rr409041	regulatory region 409041	1696 bp proximal
Tssr36	transcription start site region 36	806 bp upstream
Tssr11221	transcription start site region 11221	1418 bp downstream
Tssr11222	transcription start site region 11222	1442 bp downstream