rs36821364 SNP Detail

Summary

• ID
  rs36821364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101074600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGGCAAA CACTTGACAA
  CCTACTGTTC TCGTTTCTGT GTGTATACTT CTTCATACAA AGCAAATGAC TAATAAGACA
  GTATTTATTA ATTCATTGGT TAATAAGGAA AAATAATATA AAAAGAATGC ATTTATTCTG
  AACTTTCAGC TCTATTAATA TGCTTGCAGT TGTGTTAATA GAAGACACAT AATTTAAACC
  Y
  TAAAGTAGTA TAATAAAACT GATTTTATAA ACATAGATTT TAAAAAATTG TAATTTTTTT
  TTTTGCTTGA TTTGCCAACA GGCTTGACAT ATCTTCATTT TAAACTAAAG CTGTTTTGGT
  CCAGTATAGG ACTAGTAATA AAAAAAAGAA TACATTGGGA AAAGTATCTC AATTATCTAC
  TTCAGTTTTT CAGCATCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50785745	NES14211520	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36821364					SNP	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785745	NES14211520	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101074600 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	1662 bp proximal
Tssr91107	transcription start site region 91107	1539 bp downstream
Tssr91108	transcription start site region 91108	1575 bp downstream
Tssr91109	transcription start site region 91109	1598 bp downstream
Tssr91110	transcription start site region 91110	1680 bp downstream