rs36821401 SNP Detail

Summary

• ID
  rs36821401
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116727135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGTCTG CAGCCACAGA
  CTCGAAATAT ACAACGAAGG GGGACCACCA TCTCCAATCA ACTATGAAGT GTGTAACCAA
  CAAGACTGGC TGGTGGTTTA CCCCTGCCCC TCCCCCATCT GCCCACGGAC AGTGACTTGT
  GCCAGTGCTC TGACCGAGCT GGGCTTGACT CAAACAGCTT AACATTTCTC ACGAGAACCA
  K
  TCTTGCCTCC AAAGGAGTCA CGGGGTTCTG ATGAAGCCAC TACCTATGGA GTATCCTTTC
  CCTTTCTCCT CCTAAGAGCT TGACTTTGGA AGCATGACAT TTCCATTCTT CTCCAGGATT
  ACAGAATGCC GGAAGGGAAC CGGGAACTGA CCGTCACTGC ATGGATCGGA TCTTACAGTC
  AGTCTGTTGA AACACAACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51804050	NES14719109	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36821401					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51804050	NES14719109	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116727135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16401	CpG island 16401	1929 bp proximal
Rr618510	regulatory region 618510	within coordinates
Rr618511	regulatory region 618511	783 bp proximal
Srrm4	serine/arginine repetitive matrix 4	Intron