rs36821434 SNP Detail

Summary

• ID
  rs36821434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73967753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTTATT TCCGCCCAGC
  CCTAGCAGGG TCCCCAGATG CTCCTAGAGC AGCCCCAAAG CCATCACCTT CGCCCACATC
  TCAGGAAAGC ACCCAGCTTG CTCGTTAAGC AATACCCAGT GCCAGCTACT GCACACTCAC
  CAGCCCCTTC CTGCCAAGAC ACCCCACCCA TGTGTGCATA ACACACTCAA CATTCCCCGG
  R
  AGACAGAGAA CCCCGTGCCC GGGTGGAGCC AGACATACTG TGTCCACTGT GGTACAACCG
  ACATGCCAAG CCCTGTACAG AAGGGTTTCA TACACAGTAT CCCCCACCTC GTGTTCATTA
  GTGACACAGA GGCCATTTGA CAAATGATGA GACTGAGTCC TGAAGATGAC CAGGCATGTT
  GGACCCAGGC TCCCATGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276644	NES14517824	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36821434					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276644	NES14517824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73967753 () rs orientation: forward

Symbol	Name	Function Class
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	98 bp upstream
Tssr12216	transcription start site region 12216	65 bp upstream
Tssr12217	transcription start site region 12217	723 bp downstream