rs36822107 SNP Detail

Summary

• ID
  rs36822107
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28393169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCGCTGT CTGCCCCCTG
  CCCACGAAGA CACGCCCTGC CCGCTGGGCC AATTCTGCGC ACTGAGACCG CTAGGACGCA
  ACCTCATCAG CAACCCCTGT GGCCAAGGTG AGGCGCTGAG AAGGCGGGGC CTAGAGGAAG
  CCTAGGGGCG GGACCAAGAG AGAACTGTAG CACAAAGGGC GGGGCCCCAA GAATGCTAAT
  K
  GACAGAGCCA AGAAGGAATC CCCCGGAAGG TATTAAGGGC GGGGTCACGG GATATTTGTA
  GGCTGTGAGA CCAGAAGGAA ACCAGTGAGA GGATAGGGCG GAGTCACAAG GTATGAAATG
  GGCGGGGCCT AGAGTTAAAC CAAGAGGCAG GTCTACAGAT GTAGCAGAGG GAGGGGCTAG
  AAGTGGGGTC ACACTTGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51886709	NES14910675	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36822107					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51886709	NES14910675	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28393169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	within coordinates
Fbxo27	F-box protein 27	within coordinates
Tssr65494	transcription start site region 65494	910 bp downstream
Tssr65495	transcription start site region 65495	874 bp downstream
Tssr65496	transcription start site region 65496	734 bp downstream
Tssr65497	transcription start site region 65497	723 bp downstream
Tssr65498	transcription start site region 65498	701 bp downstream
Tssr65499	transcription start site region 65499	253 bp upstream
Tssr71557	transcription start site region 71557	1511 bp downstream