rs3682247 SNP Detail

Summary

• ID
  rs3682247
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:97203463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTCCAT TAGTAAGCTT
  TTGCAGGCAA CTTGATTATT AAAATGAACT ATGATTGGCT ATTATGTAAA TGATCTTGCC
  GACTTCATTA CATTTTTAGA CAGCTTGTAC CATACCACTC TGGTCATCTG GTCATCTCCC
  CTGTTATTAT TAGGAGACCT CATACCTACA ATATGCTTAT ACAATTTTCT GGAAAAAAAA
  W
  TGCCTTCCAA AGTTTTTTTT TTTAATAACT TCATGCACCA TAATAGCTTT TGATCATGTG
  TGCTTCCCTT ACCATTCTTG TCTCCTCCCA CTGCCCCCCT TCACTTCCTC TTCCCAAACA
  ACCCCCTTCT ATATTACTTC CTGTCTTTCT TTTTATCACC TACTGAATTC CTTTAAGGTA
  CCAACCGGAA TTTTCTGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss5058288	WI_WGS_5_94572332	WI	MOUSE	f	SNP	A						T
ss46613398	NES10429110	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A	T		T	T	T	A	T	A	T	T
ss148886293	ENSMUSSNP4554344	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs3682247					SNP	A	A	T	T	A	T	T	T	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46613398	NES10429110	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97203463 () rs orientation: forward

Symbol	Name	Function Class
Bmp2k	BMP2 inducible kinase	Intron
Rr399178	regulatory region 399178	116 bp upstream
Rr615014	regulatory region 615014	67 bp proximal
Rr615015	regulatory region 615015	251 bp proximal