rs36822779 SNP Detail

Summary

• ID
  rs36822779
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:71227333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCAGAAA AGGTACTGGG
  AGTTAGTGTT CATCTCTCCG CACGGGCTGA GTGGGGGCAT GACTGGGCAA GTGCTTTGAA
  GTCCTTTGCT ATCATTATTT AAAAGATAAT CGTTTCATGG GACAATTGGA GCAACAAGCT
  AAAGATGGCT CTTAGATTTT AAAGTGGGGC TGGGTAGAAT ATAATAAATT CTACTGATGT
  K
  AGAATAAAGC ATATATTTGC ACTGTGTACA CACATACATG TGTATTTCGG AGAATAGTTT
  CATCTTGGTT ATTTTTTAGT AGGAACCAGA AGAAACACAG ACCATCTCAT TAGCTATACT
  TAAACATAGA ATCTAATTGA TGACTAGAGA ATAGCGTTTT AAGAATGATT GGCTCATTGG
  TGTTAGTTTG AAAAGTCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss50470052	NES13703510	PERLEGEN	MM_PANEL2	f	SNP	G		T
ss325676439	CHEV_18_71253916	CHEVERUD	SCREENING_POP	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs36822779					SNP	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50470052	NES13703510	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:71227333 () rs orientation: forward

Symbol	Name	Function Class
Rr393876	regulatory region 393876	within coordinates