rs36823232 SNP Detail

Summary

• ID
  rs36823232
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAAGCTG AACCCACCCC
  TTTGCCAATC ACCGCCCGCC TAATAGCGAC TGACGGGGAC TATAGCCAAT AGGAACAACT
  GATCCATAGA CGCCAGGAGT AGAGGCGGGG CTGACGAAAC TTAGAGGTGT GGCGAACACT
  AGCTGCCTAG GCGCAGTCCT AGAGTGAGCT CCTCCCCGGC CTGTGGAAGC CTAAAGTAAA
  R
  CTGATGGGCG GGATAAAATG GAAGCGACAG CCAAACACAA ACTCTCAAGA GAAGACGGGA
  CCAATCGGAC CGGGAAAGGG AGGAGGGAAG TTCAGCCAAT AAATAGTAGA GAACGGCCTG
  GACCTTAGTG TATCCACCAA TAAGAAACTC GGGGTGTGTC TTCCAAGTTC ACAGGGGGGA
  GGGTTTAAGC CGAGCAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368050	NES14475970	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36823232					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368050	NES14475970	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	337 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	within coordinates
Rr396287	regulatory region 396287	27 bp upstream
Rr418129	regulatory region 418129	932 bp distal
Rr418130	regulatory region 418130	1317 bp distal
Rr418131	regulatory region 418131	230 bp distal
Rr418132	regulatory region 418132	within coordinates
Rr418133	regulatory region 418133	568 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	214 bp upstream
Tssr8629	transcription start site region 8629	292 bp upstream
Tssr8630	transcription start site region 8630	335 bp upstream
Tssr8631	transcription start site region 8631	414 bp upstream
Tssr8632	transcription start site region 8632	795 bp upstream
Tssr13595	transcription start site region 13595	1981 bp upstream
Tssr13596	transcription start site region 13596	1948 bp upstream
Tssr13597	transcription start site region 13597	1719 bp upstream
Tssr13598	transcription start site region 13598	1018 bp upstream
Tssr13599	transcription start site region 13599	976 bp upstream
Tssr13600	transcription start site region 13600	821 bp upstream
Tssr13601	transcription start site region 13601	273 bp upstream
Tssr13602	transcription start site region 13602	181 bp upstream
Tssr13603	transcription start site region 13603	26 bp upstream