rs36824023 SNP Detail

Summary

• ID
  rs36824023
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTCCAC TACATGGCAG
  TCCTTTCTAA GGTTCACGAG TACTATTCAT GGCTTATTTC TCTGGGCCAT GGTAGGTTTG
  AGGAGGCATA CTTCCTAGTT TTCTTCCCCT AAGTCGTCAA AGTCCTGAAG GGGGACAGTC
  TTTACAAGCA CATGTTCTGT AATCTGATTC AACCTACCCA GTAAACTTGG CGAAGCAAAG
  K
  AGAATCATTA TCACAGGAAG CAAAGGCAAC CTAAATGTGC AAGCAATAGG AAAATGTGGA
  AGCCCATCAT AGTACTTGGA CTTCATCTGC TTTTGTGCCT TCACTAAGTT TTTAAACATG
  AGCTGGCTCC TATCTGCCAT TGGCAAGGCT GGGCACTACC CACAACCTAC TTCAAGGACC
  TCTATACCGT GAGATTACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss51676638	NES14820455	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	G	T	G		T		T
ss321815811	CHEV_6_70677303	CHEVERUD	SCREENING_POP	f	SNP										G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs36824023					SNP	T	T	G	T	T	T	G	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676638	NES14820455	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704293 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1904 bp upstream
Gm68839	predicted gene, 68839	343 bp upstream
Igk	immunoglobulin kappa chain complex	555 bp downstream
Igkc	immunoglobulin kappa constant	555 bp downstream
Rr158	regulatory region 158	1358 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1874 bp downstream
Rr399685	regulatory region 399685	1462 bp downstream
Rr399686	regulatory region 399686	498 bp downstream
Tssr1880	transcription start site region 1880	458 bp downstream
Tssr56956	transcription start site region 56956	1476 bp downstream
Tssr56957	transcription start site region 56957	837 bp downstream
Tssr56958	transcription start site region 56958	821 bp downstream
Tssr56959	transcription start site region 56959	803 bp downstream
Tssr56960	transcription start site region 56960	788 bp downstream
Tssr56961	transcription start site region 56961	772 bp downstream
Tssr56962	transcription start site region 56962	760 bp downstream
Tssr56963	transcription start site region 56963	713 bp downstream
Tssr56964	transcription start site region 56964	702 bp downstream
Tssr56965	transcription start site region 56965	690 bp downstream
Tssr56966	transcription start site region 56966	682 bp downstream
Tssr56967	transcription start site region 56967	662 bp downstream
Tssr56968	transcription start site region 56968	632 bp downstream
Tssr56969	transcription start site region 56969	608 bp downstream
Tssr56970	transcription start site region 56970	589 bp downstream
Tssr56971	transcription start site region 56971	577 bp downstream
Tssr56972	transcription start site region 56972	518 bp downstream
Tssr56973	transcription start site region 56973	507 bp downstream
Tssr56974	transcription start site region 56974	477 bp downstream
Tssr56975	transcription start site region 56975	440 bp downstream
Tssr61321	transcription start site region 61321	800 bp upstream
Tssr61322	transcription start site region 61322	652 bp upstream
Tssr61323	transcription start site region 61323	571 bp upstream
Tssr61324	transcription start site region 61324	494 bp upstream
Tssr61325	transcription start site region 61325	461 bp upstream
Tssr61326	transcription start site region 61326	448 bp upstream
Tssr61327	transcription start site region 61327	422 bp upstream
Tssr61328	transcription start site region 61328	344 bp upstream