rs3682429 SNP Detail

Summary

• ID
  rs3682429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108778256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT TTCTGAAGCC ATATGAAGTT
  R
  CAGAGCCTTG GGTAGAGTTT GTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5058471	WI_WGS_5_106310023	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3682429					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108778256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	81 bp distal
Gak	cyclin G associated kinase	635 bp upstream
Rr616724	regulatory region 616724	371 bp distal
Rr616725	regulatory region 616725	within coordinates
Tmem175	transmembrane protein 175	within coordinates
Tssr47844	transcription start site region 47844	514 bp downstream
Tssr47845	transcription start site region 47845	372 bp downstream
Tssr47846	transcription start site region 47846	340 bp downstream
Tssr52443	transcription start site region 52443	712 bp upstream
Tssr52444	transcription start site region 52444	683 bp upstream
Tssr52445	transcription start site region 52445	629 bp upstream